TRAINING & EVENTS
Upcoming events
Event types listed:
Events organised by the ACCS Project
Events organised by ACCS Project partners
External conferences, seminars (online and in-person) and workshops that are of interest to imaging scientists and their community
ImagingTools is pleased to promote both our own and other events, training and workshops that may benefit our community.
To advertise your activity with ImagingTools, please contact us.
ACCS Brain Imaging Workshop Series: Advanced Imaging Application on the CVL Platform
Continuing with ACCS Brain Imaging Workshop Series, our next webinar is on Advanced Imaging Applications on the CVL Platform. Join us on November 9th, 2022 for another comprehensive workshop series followed by a practical session on November 15th, 2022.
About
ACCS Brain Imaging Workshop Series started in 2021. Over five workshops focusing on processing brain magnetic resonance Imaging (MRI) on CVL, including data collection, data converting, basic imaging analysis on structural imaging data as well as machine learning on imaging have been delivered.
ACCS WP5 is thrilled to bring a new webinar as part of this series, this time focusing on advanced imaging applications on CVL in different MR modalities, including 1) structural MRI with spectral shape analysis in eigenmode analysis; 2) Diffusion tensor imaging (DTI) analysis, and 3) resting-state functional MRI analysis.
The workshop will be delivered in two parts: Webinar (9th/Nov, 13:00 to 15:00 AEDT) in which three experts will present their research work as examples of these three advanced imaging applications. This workshop will be followed by a hands-on session (15th/Nov, 13:00 to 15:00 AEDT) that will focus on how to replicate the methods of these three modalities (presented in the webinar) on CVL@MASSIVE, preparation of the software, pipelines and practice data for all participants. The goal is to teach researchers to access CVL and run these pipelines, which include eigenmode, DTI preprocessing through Mrtrix, fMRI preprocessing (Conn and fMRIprep) and connectome and seed-base analysis (Conn) and Connectome analysis using Network Based Statistic Toolbox.
Event Program
*This is a draft program, a final agenda will be updated closer to the event.
Structural MRI With Shape Analysis - Dr Kevin Aquino (The University of Sydney - BrainKey)
Title: A multiscale characterization on cortical shape
Structural connectivity of diffusion MRI - Ms Suzan Maleki (Monash Univeristy)
Title: Chronic cannabis use effects on brain connectivity: A connectome analysis (to be advised)
Functional connectivity of the fMRI - Hannah Thomson (Australian Catholic University)
Title: Examine Resting-state Functional Connectivity Differences between Heavy Cannabis Users and Non UsersThe preamble of the hands-on session on November 15th, 2022 -Dr Chao Suo, Dr Yu-Chi Chen and Suzan Maleki (Monash University)
A brief demonstration of how to run the relevant analysis on the CVL platform.
For more information about this webinar please contact us
IMPORTANT
This webinar will be followed by a hands-on session on November 15th, 2022. If you are interested in joining this session, please register here separately.
Although it is not compulsory to participate in the webinar to be able to join the hands-on session, it is highly recommended.
Event details
Date
9 November 2022
Time
1:00 pm – 3:00 pm AEDT
Location
online event
Host organisation
Australian Characterisation Commons at Scale (ACCS) Project
ACCS Brain Imaging Series. Drop-in. Troubleshooting activities with ML analysis on CVL@Wiener.
This is a drop-in session for CVL@Wiener users who attended the previous workshop on 26 May and who would like to ask any questions about adapting the workflows to work on that platform. Previous attendees with follow-up questions regarding running analyses on CVL@M3 are also welcome to pop by.
ACCS Brain Imaging Series. Workshop. Activities with ML analysis on CVL@M3.
A follow-up workshop from the Machine Learning webinar, looking at ways to implement ML techniques within CVL@M3.
ACCS Brain Imaging Workshop Series: Webinar on Machine Learning for Neuroimaging
The ACCS Brain Imaging Series announces a second theme for 2022: machine learning for neuroimaging. Bringing together experts from Australian and New Zealand, these events will explore how advances in ML can be used in the neurosciences.
ACCS Brain Imaging Series. Drop-in. Troubleshooting working with sMRI data within CVL.
This is a drop-in session for CVL@Wiener users who attended the previous workshop on 31 March and who would like to ask any questions about adapting the workflows to work on that platform. Previous attendees with follow-up questions regarding running analyses on CVL@M3 are also welcome to pop by.
ACCS Brain Imaging Series. Workshop on working with sMRI data within CVL.
In this hands-on session, Dr Chao Suo (Monash University) builds on the theme of practical methods in analysing sMRI data using the CVL. Participants will follow analysis pipelines using example data. Workshop attendees are also invited to BYO data and are welcome to ask Chao’s advice and guidance for their planned analyses.
Microscopy Australia: The Characterisation Virtual Laboratory (CVL)
You are invited to attend Microscopy Australia’s next ‘All Things Data’ webinar: The Characterisation Virtual Laboratory (CVL) by Dr Kathryn Hall.
ACCS Brain Imaging Workshop Series: Lecture on working with sMRI data within CVL.
The ACCS Brain Imaging Series launches for 2022 with a session by Dr Chao Suo (Monash University), focussing on practical methods in analysing sMRI data using the CVL.
ACCS Knowledge Share: Developments with CVL@UWA
Dean Taylor (Senior Research Engineer, University of Western Australia) will walk us through developments towards the deployment of a new node of CVL@UWA.
ACCS Knowledge Share: IPP@IMB
Drs Hoang Nguyen, James Springfield and Nicholas Condon from The University of Queensland showcase their newly-developed Image Processing Portal for students and researchers at the Institute for Molecular Bioscience.
OHBM/ACCS Workshop: Working with data collections on CVL@M3
This workshop extends the content from our webinar on data collections (7 December, 2021). Participants will learn how to work with data collections within the ACCS digital landscape to enhance their research outputs.
OHBM/ACCS Webinar: Working with data collections
Our second webinar will focus on data collections and using them within the ACCS digital landscape.
Darwin Regional Conference Light Microscopy Australia, 2021: Microscopy Today
Light Microscopy Australia (LMA) is collaborating with Darwin, one of India’s Biggest Evolutionary Movements in Biology, to bring you a Regional Conference in the Australian time zone with the theme Microscopy Today.
CRYOZ Symposium
The Monash Ramaciotti Centre for Cryo-EM is hosting a virtual half-day Cryo-EM Symposium for the Australian Cryo-EM community CRYOZ. Talks will focus on technical advances and workflows in single-particle cryo-EM and cryo-electron tomography.
OHBM/ACCS Workshop: Using BIDS within CVL@Wiener*
Small online session to work through using BIDS within the Neurodesk menu on CVL@Wiener
OHBM/ACCS Workshop: Using BIDS within CVL@M3
Small online session to work through using BIDS within the Neurodesk menu on CVL@M3
eResearch Australasia 2021 Post-Conference Workshop: ACCS Project
ACCS will host a post-conference workshop after the AeRO eResearch Australasia 2021 Conference. The workshop will focus on teaching transferable skills to eResearch support so that they can educate imaging researchers about using the ACCS ecosystem to support FAIR workflows and accelerate their research outputs.
OHBM/ACCS Workshop: Accessing CVL@M3
Step-by-step workshop to get you set up with CVL@M3
OHBM/ACCS Workshop: Accessing CVL@Wiener*
Step-by-step workshop to get you set up with CVL@Wiener
ACCS Knowledge Share: Insights from Training
Kathryn Hall summarise findings from the imaging community about their hopes and aspirations for the training package.
OHBM/ACCS Webinar: Brain Imaging Data Structure (BIDS)
The inaugural webinar and workshops will centre around BIDS – what is it? why should you use it? and how can you build it into your analysis pipeline. Please join us for our first webinar to learn more about BIDS.
ACCS Presentation at CSIRO Labs of the Future Virtual Symposium
Kathryn Hall will be providing an overview of the ACCS Project and how it can support researchers to integrate high-performance imaging tools into their workflows to accelerate outcomes.
ISMRM ANZ Chapter: Reproducibility Tools Virtual Workshop
Virtual workshop about reproducible tools for magnetic resonance research.
ACCS Workshop: Accessing and using CVL@Wiener for JCU researchers
Hands-on workshop about accessing and using the Characterisation Virtual Laboratory for staff and researchers at James Cook University
Microscopy Australia: In-Situ Transmission Electron Microscopy Symposium
In-situ TEM symposium organised by Microscopy Australia
ACCS Knowledge Share: cryoSPARC demonstration
Dr Simon Brown from the University of Wollongong will be joining us to give a brief demonstration of cryoSPARC in action for our next ACCS Knowledge Share session.
ACCS Webinar: Introduction to CVL@Wiener for JCU researchers
An introduction to the Characterisation Virtual Laboratory for staff and researchers at James Cook University
ACCS Information Session: Connecting to and using Globus for research data transfer
Demonstration of Globus for secure large-volume data transfer
ImagingTools is an initiative of the Australian Characterisation Commons at Scale (ACCS) Project. ACCS is supported by the Australian Research Data Commons (ARDC).
The ARDC is enabled by NCRIS.